SIDRA

Sample Set Annotation Tool

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Disease

ER+ Breast Cancer (7)
 LN- Breast Cancer (4)
 Mixed Breast Cancer Types (9)

Sample Source

Breast Cancer Tissue (19)
 Centre Rene´ Huguenin, Saint-Cloud, France (1)
 Cleveland Clinic Foundation, Cleveland, OH, USA (1)
 Erasmus Medical Center (EMC), the Netherlands (2)
 Guys Hospital, London, UK (3)
 Institut Gustave Roussy, Villejuif, France (1)
 Institute Jules Bordet, Brussels, Belgium (1)
 Institute of Oncology, Ljubljana, Slovenia (1)
 Johannes Gutenberg University, Mainz, Germany (1)
 John Radcliffe Hospital, Oxford, UK (4)
 Karolinska Hospital, Stockholm, Sweden (2)
 MDA-MB-231 (1)
 Memorial Sloan-Kettering Cancer Center, NY, USA (1)
 Nagalla 2013 (19)
 National Cancer Institute, Bari, Italy (2)
 National University Hospital, Singapore (3)
 Technische Universitaet Muenchen, Germany (1)
 U C San Francisco Comprehensive Cancer Center (1)
 Uppsala University Hospital , Uppsala, Sweden (3)

Species

Homo sapiens (20)

Analyst

Platform

Affymetrix HG-U133A (16)
 Affymetrix HG-U133B (3)
 Affymetrix HG-U133_Plus_2 (3)
 Affymetrix HuGene 1.0 ST v1 (2)

Institution

GEO (24)

Sample Set Annotation Tool

Sample Set Platform Species Disease Sample Source Sample Count  
CD4+ TIL in human breast cancer - GSE36769.GPL570 Homo sapiens Mixed Breast Cancer Types   60
Guy's hospital dataset (GUYT2) - GSE9195.GPL570.fCEL Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 77
Guys hospital (GUYT) dataset- GSE6532.GPL570 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 87
John Radcliff Hospital (OXFU, OXFT) dataset- GSE6532.GPL96 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 327
John Radcliff Hospital (OXFU, OXFT) dataset- GSE6532.GPL97 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 327
Uppsala and Singapore dataset - GSE4922.GPL96 Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 289
Uppsala and Singapore dataset - GSE4922.GPL97 Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 289
Karolinska (STO) dataset - GSE1456.GPL96 Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 159
Karolinska (STO) dataset - GSE1456.GPL97 Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 159
Bordet Radcliffe NUH dataset - GSE45255.GPL96 Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 139
National Cancer Institute – Bari (YAU) dataset - GSE8193.GPL4685 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 47
University of California San Francisco (YAU) dataset - GSE7378.GPL4685 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 54
Erasmus Medical Center (EMC) dataset 1 - GSE2034.GPL96 Homo sapiens LN- Breast Cancer Nagalla 2013 ... 286
Erasmus Medical Center (EMC) dataset 2 - GSE5327.GPL96 Homo sapiens LN- Breast Cancer Nagalla 2013 ... 58
Europe and Cleveland (EMCT) dataset - GSE12093.GPL96 Homo sapiens ER+ Breast Cancer Nagalla 2013 ... 136
TRANSBIG (TBIG) dataset - GSE7390.GPL96 Homo sapiens LN- Breast Cancer Nagalla 2013 ... 198
GSE47561_log2_RMA_2renormalized_data       1570
GSE47561_log2_RMA_5renormalized_data       1570
Memorial Sloan-Kettering Cancer Center (MSKCC) dataset - GSE2603.GPL96_Clinical samples Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 99
Memorial Sloan-Kettering Cancer Center (MSKCC) dataset - GSE2603.GPL96_Breast cancer cell lines Homo sapiens Mixed Breast Cancer Types MDA-MB-231, Nagalla 2013 ... 22
BRCA-Adams_DB_Expression.probe_transformed       84
BRCA-Adams_DB_Expression.probe_transformed2       84
Nagalla 2013 reconstituted public dataset Homo sapiens Mixed Breast Cancer Types Nagalla 2013 ... 1839
Johannes Gutenberg University (MAINZ) dataset - GSE11121.GPL96 Homo sapiens LN- Breast Cancer Nagalla 2013 ... 200
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