You are not logged in. | Log in
In Progress
Clinical

Affymetrix U133B

Purpose

The aim of this project was to use gene expression profiling to identify patients whose tumors have a low malignant potential, making adjuvant therapy unnecessary and potentially harmful, and to identify patients in need of more effective adjuvant therapies. Furthermore, authors wanted to show that the expression profile worked irrespective of primary adjuvant therapy or not and provided independent information to the established clinical factors.

Hypothesis

The hypothesis of this study was that gene expression signatures can discriminate between breast cancer patients that benefit from adjuvant therapy and patients that fail to benefit from therapy.

Experimental Design

This dataset consists of breast cancer patients that were operated at the Karolinska Hospital from 1 January 1994 to 31 December 1996 (n=524), identified from the population-based Stockholm–Gotland breast cancer registry established in 1976. Exclusion criteria were inavailability of frozen tumours, insufficient quality of tumour material, neoadjuvant treatment, in situ cancer, stage IV disease and active refusion to participate, leading to a final 159 patients for analysis. Mean age at breast cancer diagnosis was 58. The ethical committee at the Karolinska Hospital approved this microarray expression project.

Experimental Variables

--

Controls

--

Methods

RNA extraction was performed according to the RNeasy mini protocol (Qiagen, Hilden, Germany). In brief, a portion of the deep frozen tumor was cut into minute pieces and transferred into test tubes (maximum 40 mg/tube) with RLT buffer (RNeasy lysis Buffer, Qiagen, Hilden, Germany), followed by homogenization for around 30–40 s. Proteinase K was then added and the samples were treated for 10 min at 55°C. Total RNA was then isolated using Qiagen's microspin technology. DNase was also added to some samples to further increase the RNA quality. The quality of the RNA was assessed by measuring the 28S:18S ribosomal RNA ratio using an Agilent 2100 bioanalyzer (Agilent Technologies, Rockville, MD, USA). All samples with RNA of high quality were then stored at -70°C until microarray analyses.

Preparation of in vitro transcription products and oligonucleotide array hybridization and scanning were performed according to the protocol of Affymetrix (Santa Clara, CA, USA). In brief, the amount of starting total RNA for each probe preparation varied between 2 and 5 ?g. The in vitro transcription reactions were performed in batches to generate biotinylated cRNA targets, which were subsequently chemically fragmented at 95°C for 35 min. Fragmented and biotinylated cRNA (10 ?g) was hybridized at 45°C for 16 hours to Affymetrix high-density oligonucleotide array human HG-U133 set chips. The arrays were washed, and were then stained with streptavidin–phycoerythrin (final concentration, 10 ?g/ml). The array was then scanned according to the manufacturer's instructions (Affymetrix Genechip® Technical Manual, 2001; Affymetrix). The scanned images were inspected for the presence of obvious defects (artifacts or scratches) on the array. In the case of visible microarray artifacts, the sample was rehybridized and rescanned on new chips using the same fragmented probe. The raw expression data were normalized using the global mean method (Ploner et al).

A statistical data filter was applied to reduce noise and to obtain a useful and relevant probe set to identify markers that were highly correlated to clinical parameters. This led to 6573 final probe sets for analysis, consisting of 3393 probe sets from U133A and 3180 probe sets from U133B. All analyses were performed using natural-log-transformed expression values.

Additional Information

Pawitan, Yudi, Judith Bjöhle, Lukas Amler, Anna-Lena Borg, Suzanne Egyhazi, Per Hall, Xia Han, et al. “Gene Expression Profiling Spares Early Breast Cancer Patients from Adjuvant Therapy: Derived and Validated in Two Population-Based Cohorts.” Breast Cancer Research: BCR 7, no. 6 (2005): R953–64. doi:10.1186/bcr1325.

Ploner, Alexander, Lance D. Miller, Per Hall, Jonas Bergh, and Yudi Pawitan. “Correlation Test to Assess Low-Level Processing of High-Density Oligonucleotide Microarray Data.” BMC Bioinformatics 6 (2005): 80. doi:10.1186/1471-2105-6-80.

Microarray
Affymetrix HG-U133B
159 Samples Loaded: 159
Human (Homo sapiens)
Nagalla 2013 , Breast Cancer Tissue
Mixed Breast Cancer Types
Sample Set Spreadsheet
Please log in in order to upload files.
Samples Preview
Sample ID series IMS IBS IDS ICR
GSM107232 NA Her2 IBD WID ICR3
GSM107233 NA LumB IBE WID ICR3
GSM107234 NA LumA IBD PID ICR2
GSM107235 NA Normal IBE NA ICR3
GSM107236 NA LumB IBD PID ICR3
Please log in in order to upload files.
File
GSE1456.GPL97_appended.meta.data_v1.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
  •   |  View in GXB »
Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID Series IMS IBS IDS ICR Array Sample ID Sample Title DMFS 10Y EVENT DMFS 10Y TIME Disease Free Survival Event Distant Met Free Survival Event Distant Met Free Survival Age At Initial Pathologic Diagnosis Lymph Node Status ER Status PR Status Histology Differentiation Grade Tumor Size Cm Pathology T Stage Disease Free Survival Years Breast Cancer Cause Of Death Vital Status Molecular Subtype Survival Time Years
GSM107232
NA
Her2
IBD
WID
ICR3
400003587
X027JO (HG-U133B)
DistantMetastasis
3.82
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
3.82
1
dead
No Subtype
4.14
GSM107233
NA
LumB
IBE
WID
ICR3
400003588
X350JO (HG-U133B)
DistantMetastasisFree
8.15
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.15
0
alive
Luminal B
8.15
GSM107234
NA
LumA
IBD
PID
ICR2
400003589
X028JA (HG-U133B)
DistantMetastasisFree
2.22
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.36
0
dead
Luminal A
2.22
GSM107235
NA
Normal
IBE
NA
ICR3
400003590
X126AS (HG-U133B)
DistantMetastasisFree
8.23
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.23
0
alive
No Subtype
8.23
GSM107236
NA
LumB
IBD
PID
ICR3
400003591
X005JO (HG-U133B)
DistantMetastasisFree
5.55
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.07
0
dead
Luminal A
5.55
GSM107237
NA
LumB
IBE
PID
ICR3
400003592
X045OL (HG-U133B)
DistantMetastasisFree
8.3
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.3
0
alive
Luminal B
8.3
GSM107238
NA
LumB
IBD
PID
ICR3
400003593
X041LA (HG-U133B)
DistantMetastasisFree
4.42
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.12
0
dead
Luminal A
4.42
GSM107239
NA
LumA
IBD
WID
ICR1
400003594
X229LA (HG-U133B)
DistantMetastasisFree
8.07
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.07
0
alive
No Subtype
8.07
GSM107240
NA
Basal
IBE
FID
ICR4
400003595
X347JA (HG-U133B)
DistantMetastasisFree
6.38
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.38
0
alive
Basal
6.38
GSM107241
NA
Normal
IBE
NA
ICR2
400003596
X122FO (HG-U133B)
DistantMetastasisFree
8.13
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.13
0
alive
ERBB2
8.13
GSM107242
NA
Basal
IBE
FID
ICR4
400003597
X054BO (HG-U133B)
DistantMetastasis
4.08
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
4.08
1
dead
Basal
5.51
GSM107243
NA
LumA
IBD
PID
ICR1
400003598
X204FA (HG-U133B)
DistantMetastasisFree
8.11
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.11
0
alive
No Subtype
8.11
GSM107244
NA
LumB
IBE
PID
ICR1
400003599
X356AL (HG-U133B)
DistantMetastasis
3.47
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
3.47
1
dead
Luminal B
5.47
GSM107245
NA
LumB
IBE
WID
ICR4
400003600
X089HO (HG-U133B)
DistantMetastasisFree
6.82
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
0.56
0
alive
Luminal B
6.82
GSM107246
NA
LumA
IBD
PID
ICR2
400003601
X215HE (HG-U133B)
DistantMetastasis
5.53
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.53
1
dead
Normal Like
6.25
GSM107247
NA
LumB
IBE
WID
ICR3
400003602
X223LI (HG-U133B)
DistantMetastasisFree
7.71
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.71
0
alive
No Subtype
7.71
GSM107248
NA
LumB
IBD
PID
ICR1
400003603
X055SV (HG-U133B)
DistantMetastasis
4.44
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
4.44
1
dead
Luminal A
6.22
GSM107249
NA
Her2
IBD
PID
ICR2
400003604
X380MO (HG-U133B)
DistantMetastasis
1.39
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.39
1
dead
Basal
3.06
GSM107250
NA
Basal
IBE
PID
ICR2
400003605
X111MA (HG-U133B)
DistantMetastasisFree
5.87
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.32
0
dead
Basal
5.87
GSM107251
NA
LumA
IBD
WID
ICR3
400003606
X264LA (HG-U133B)
DistantMetastasisFree
7.86
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.86
0
alive
Luminal A
7.86
GSM107252
NA
LumA
IBD
PID
ICR1
400003607
X101GL (HG-U133B)
DistantMetastasis
2.92
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
2.92
1
dead
Luminal A
3.85
GSM107253
NA
LumB
IBE
WID
ICR3
400003608
X296NY (HG-U133B)
DistantMetastasis
1.09
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.09
1
dead
Luminal B
2.65
GSM107254
NA
LumB
IBE
PID
ICR1
400003609
X185NY (HG-U133B)
DistantMetastasis
4.36
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
4.36
1
dead
Luminal B
5.63
GSM107255
NA
LumB
IBD
PID
ICR1
400003610
X057FR (HG-U133B)
DistantMetastasisFree
7.61
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.61
0
alive
No Subtype
7.61
GSM107256
NA
LumA
IBD
PID
ICR1
400003611
X298LA (HG-U133B)
DistantMetastasisFree
7.55
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.55
0
alive
Normal Like
7.55
GSM107257
NA
LumB
IBD
PID
ICR3
400003612
X376FR (HG-U133B)
DistantMetastasis
1.19
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
1.19
1
dead
Luminal A
3.18
GSM107258
NA
LumA
IBD
WID
ICR2
400003613
X164MY (HG-U133B)
DistantMetastasisFree
8.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.03
0
alive
Normal Like
8.03
GSM107259
NA
LumB
IBE
PID
ICR2
400003614
X071AV (HG-U133B)
DistantMetastasis
5.16
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.16
0
alive
Luminal A
7.31
GSM107260
NA
Basal
IBE
PID
ICR2
400003615
X377DE (HG-U133B)
DistantMetastasisFree
7.65
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.65
0
alive
Normal Like
7.65
GSM107261
NA
Basal
IBE
WID
ICR3
400003616
X166JO (HG-U133B)
DistantMetastasisFree
7.38
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.38
0
alive
Basal
7.38
GSM107262
NA
Her2
IBE
FID
ICR4
400003617
X187OL (HG-U133B)
DistantMetastasisFree
7.29
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.29
0
alive
Basal
7.29
GSM107263
NA
LumA
IBD
WID
ICR3
400003618
X121LE (HG-U133B)
DistantMetastasisFree
8.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.03
0
alive
Luminal A
8.03
GSM107264
NA
LumA
IBD
WID
ICR2
400003619
X318KI (HG-U133B)
DistantMetastasisFree
8.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.03
0
alive
Normal Like
8.03
GSM107265
NA
LumA
IBD
PID
ICR2
400003620
X160LU (HG-U133B)
DistantMetastasis
6.65
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G1
NA
NA
6.65
0
alive
Luminal A
7.93
GSM107266
NA
LumA
IBD
PID
ICR3
400003621
X297PE (HG-U133B)
DistantMetastasisFree
7.73
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.73
0
alive
No Subtype
7.73
GSM107267
NA
LumB
IBE
PID
ICR4
400003622
X113SO (HG-U133B)
DistantMetastasisFree
8.2
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.2
0
alive
Luminal B
8.2
GSM107268
NA
LumA
IBD
PID
ICR1
400003623
X361NO (HG-U133B)
DistantMetastasisFree
7.59
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.59
0
alive
No Subtype
7.59
GSM107269
NA
Her2
IBE
FID
ICR4
400003624
X382GU (HG-U133B)
DistantMetastasisFree
7.81
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.81
0
alive
ERBB2
7.81
GSM107270
NA
LumB
IBE
PID
ICR2
400003625
X003WI (HG-U133B)
DistantMetastasisFree
8.48
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.48
0
alive
Luminal A
8.48
GSM107271
NA
LumA
IBD
WID
ICR3
400003626
X309EV (HG-U133B)
DistantMetastasisFree
7.95
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.95
0
alive
Normal Like
7.95
GSM107272
NA
LumA
IBD
WID
ICR3
400003627
X031ER (HG-U133B)
DistantMetastasisFree
2.24
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.34
0
dead
Luminal A
2.24
GSM107273
NA
LumB
IBE
WID
ICR2
400003628
X214WI (HG-U133B)
DistantMetastasisFree
7.28
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.28
0
alive
Luminal B
7.28
GSM107274
NA
Normal
IBE
NA
ICR1
400003629
X310WI (HG-U133B)
DistantMetastasisFree
7.96
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.96
0
alive
Normal Like
7.96
GSM107275
NA
ClaudinLow
IBD
PID
ICR1
400003630
X319AN (HG-U133B)
DistantMetastasisFree
6.86
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.86
0
alive
Basal
6.86
GSM107276
NA
LumA
IBD
PID
ICR1
400003631
X035SI (HG-U133B)
DistantMetastasisFree
7.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.03
0
alive
No Subtype
7.03
GSM107277
NA
Normal
IBE
NA
ICR1
400003632
X086LI (HG-U133B)
DistantMetastasisFree
8.46
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.46
0
alive
Normal Like
8.46
GSM107278
NA
LumB
IBD
PID
ICR1
400003633
X268AR (HG-U133B)
DistantMetastasisFree
7.84
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.84
0
alive
Luminal A
7.84
GSM107279
NA
LumB
IBD
PID
ICR2
400003634
X024BJ (HG-U133B)
DistantMetastasisFree
6.13
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.13
0
alive
No Subtype
6.13
GSM107280
NA
Her2
IBE
FID
ICR4
400003635
X188AH (HG-U133B)
DistantMetastasisFree
7.21
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.21
0
alive
Luminal B
7.21
GSM107281
NA
ClaudinLow
IBD
PID
ICR1
400003636
X074KA (HG-U133B)
DistantMetastasisFree
8.13
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.13
0
alive
Normal Like
8.13
GSM107282
NA
LumB
IBE
FID
ICR4
400003637
X084GE (HG-U133B)
DistantMetastasisFree
7.65
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.65
0
alive
Luminal B
7.65
GSM107283
NA
ClaudinLow
IBD
WID
ICR2
400003638
X219WO (HG-U133B)
DistantMetastasisFree
7.07
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.07
0
alive
Normal Like
7.07
GSM107284
NA
Her2
IBE
WID
ICR2
400003639
X125WA (HG-U133B)
DistantMetastasis
3.99
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
3.99
1
dead
ERBB2
4.72
GSM107285
NA
LumA
IBD
WID
ICR1
400003640
X333SI (HG-U133B)
DistantMetastasisFree
7.55
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.55
0
alive
Normal Like
7.55
GSM107286
NA
LumA
IBD
PID
ICR1
400003641
X026NA (HG-U133B)
DistantMetastasisFree
7.75
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.75
0
alive
Luminal A
7.75
GSM107287
NA
LumA
IBD
FID
ICR4
400003642
X172SA (HG-U133B)
DistantMetastasisFree
8.08
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.08
0
alive
Luminal A
8.08
GSM107288
NA
ClaudinLow
IBD
PID
ICR2
400003643
X373LI (HG-U133B)
DistantMetastasis
1.55
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.55
1
dead
Basal
2.38
GSM107289
NA
LumA
IBD
PID
ICR1
400003644
X018GU (HG-U133B)
DistantMetastasisFree
8.4
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.4
0
alive
Luminal A
8.4
GSM107290
NA
ClaudinLow
IBD
WID
ICR4
400003645
X115LU (HG-U133B)
DistantMetastasisFree
7.54
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.54
0
alive
Basal
7.54
GSM107291
NA
LumA
IBD
WID
ICR2
400003646
X178WA (HG-U133B)
DistantMetastasisFree
7.28
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.28
0
alive
Normal Like
7.28
GSM107292
NA
LumB
IBD
WID
ICR3
400003647
X076ER (HG-U133B)
DistantMetastasisFree
7.73
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.73
0
alive
Luminal A
7.73
GSM107293
NA
Her2
IBE
PID
ICR3
400003648
X161JO (HG-U133B)
DistantMetastasis
1.85
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.85
1
dead
ERBB2
3
GSM107294
NA
Normal
IBE
NA
ICR2
400003649
X137TH (HG-U133B)
DistantMetastasisFree
6.31
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.31
0
alive
Normal Like
6.31
GSM107295
NA
Normal
IBE
NA
ICR2
400003650
X158KU (HG-U133B)
DistantMetastasisFree
8.3
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.3
0
alive
Normal Like
8.3
GSM107296
NA
LumA
IBD
PID
ICR2
400003651
X259AB (HG-U133B)
DistantMetastasisFree
7.07
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.07
0
alive
Normal Like
7.07
GSM107297
NA
Normal
IBE
NA
ICR1
400003652
X246TA (HG-U133B)
DistantMetastasis
3.15
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
3.15
1
dead
Luminal A
6.4
GSM107298
NA
Normal
IBE
NA
ICR2
400003653
X261EN (HG-U133B)
DistantMetastasisFree
8.15
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.15
0
alive
Normal Like
8.15
GSM107299
NA
Basal
IBE
FID
ICR1
400003654
X191SA (HG-U133B)
DistantMetastasisFree
8.24
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.24
0
alive
Basal
8.24
GSM107300
NA
Basal
IBE
PID
ICR2
400003655
X372LU (HG-U133B)
DistantMetastasisFree
6.02
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.02
0
alive
Basal
6.02
GSM107301
NA
LumB
IBD
WID
ICR4
400003656
X242KR (HG-U133B)
DistantMetastasisFree
5.85
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
5.85
0
alive
Luminal B
5.85
GSM107302
NA
LumA
IBD
WID
ICR2
400003657
X112FR (HG-U133B)
DistantMetastasisFree
5.96
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
5
0
alive
Normal Like
5.96
GSM107303
NA
Normal
IBE
NA
ICR2
400003658
X210NI (HG-U133B)
DistantMetastasisFree
5.81
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.81
0
alive
Normal Like
5.81
GSM107304
NA
Normal
IBE
NA
ICR3
400003659
X281BR (HG-U133B)
DistantMetastasisFree
5.86
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.86
0
alive
Normal Like
5.86
GSM107305
NA
Her2
IBD
PID
ICR1
400003660
X010BJ (HG-U133B)
DistantMetastasisFree
5.75
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.75
0
alive
Luminal A
5.75
GSM107306
NA
LumA
IBD
PID
ICR2
400003661
X211WA (HG-U133B)
DistantMetastasisFree
5.71
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.71
0
alive
Luminal A
5.71
GSM107307
NA
LumA
IBD
PID
ICR2
400003662
X213BI (HG-U133B)
DistantMetastasisFree
5.63
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.63
0
alive
No Subtype
5.63
GSM107308
NA
LumB
IBD
PID
ICR1
400003663
X276EK (HG-U133B)
DistantMetastasisFree
5.68
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.68
0
alive
Luminal A
5.68
GSM107309
NA
LumA
IBD
PID
ICR1
400003664
X225KA (HG-U133B)
DistantMetastasisFree
7.99
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.99
0
alive
Normal Like
7.99
GSM107310
NA
LumB
IBE
WID
ICR3
400003665
X040TH (HG-U133B)
DistantMetastasisFree
5.56
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
5.56
0
alive
Luminal B
5.56
GSM107311
NA
LumB
IBD
PID
ICR3
400003666
X360RI (HG-U133B)
DistantMetastasis
1.61
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.61
1
dead
Luminal B
4.61
GSM107312
NA
LumA
IBD
WID
ICR3
400003667
X243BE (HG-U133B)
DistantMetastasisFree
5.69
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.69
0
alive
No Subtype
5.69
GSM107313
NA
LumB
IBD
PID
ICR1
400003668
X119AN (HG-U133B)
DistantMetastasisFree
5.79
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.27
0
dead
Luminal A
5.79
GSM107314
NA
LumA
IBD
PID
ICR1
400003669
X218BE (HG-U133B)
DistantMetastasis
1.04
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
1.04
1
dead
Normal Like
1.73
GSM107315
NA
Normal
IBE
NA
ICR2
400003670
X231CA (HG-U133B)
DistantMetastasisFree
8.33
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.33
0
alive
Normal Like
8.33
GSM107316
NA
LumB
IBD
WID
ICR3
400003671
X142SW (HG-U133B)
DistantMetastasisFree
6.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.03
0
alive
Luminal A
6.03
GSM107317
NA
LumB
IBD
PID
ICR2
400003672
X011DA (HG-U133B)
DistantMetastasisFree
4.51
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.82
0
dead
Luminal A
4.51
GSM107318
NA
Normal
IBE
NA
ICR3
400003673
X174HE (HG-U133B)
DistantMetastasisFree
5.86
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.86
0
alive
Normal Like
5.86
GSM107319
NA
LumB
IBD
FID
ICR3
400003674
X117KO (HG-U133B)
DistantMetastasis
4.3
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G1
NA
NA
4.3
0
alive
Luminal B
5.56
GSM107320
NA
Normal
IBE
NA
ICR2
400003675
X199PO (HG-U133B)
DistantMetastasisFree
7.92
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.92
0
alive
Luminal A
7.92
GSM107321
NA
LumB
IBD
PID
ICR3
400003676
X063PE (HG-U133B)
DistantMetastasisFree
6.52
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.52
0
alive
Luminal A
6.52
GSM107322
NA
Basal
IBE
PID
ICR3
400003677
X371AS (HG-U133B)
DistantMetastasisFree
7.42
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.42
0
alive
Basal
7.42
GSM107323
NA
LumA
IBD
PID
ICR2
400003678
X240SM (HG-U133B)
DistantMetastasisFree
6.46
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.46
0
alive
No Subtype
6.46
GSM107324
NA
Normal
IBE
NA
ICR3
400003679
X307EG (HG-U133B)
DistantMetastasisFree
8.43
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.43
0
alive
Normal Like
8.43
GSM107325
NA
ClaudinLow
IBD
PID
ICR3
400003680
X183AN (HG-U133B)
DistantMetastasis
6.24
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.24
1
dead
Basal
6.72
GSM107326
NA
Normal
IBE
NA
ICR3
400003681
X374BR (HG-U133B)
DistantMetastasis
3.89
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
3.89
0
alive
Normal Like
7.28
GSM107327
NA
LumB
IBD
FID
ICR4
400003682
X342BL (HG-U133B)
DistantMetastasis
4.27
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
4.27
0
alive
Luminal B
7.96
GSM107328
NA
LumA
IBD
WID
ICR2
400003683
X165AN (HG-U133B)
DistantMetastasisFree
7.59
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.59
0
alive
Normal Like
7.59
GSM107329
NA
Basal
IBD
PID
ICR2
400003684
X262SP (HG-U133B)
DistantMetastasis
1.21
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
0.23
1
dead
No Subtype
1.21
GSM107330
NA
LumA
IBD
PID
ICR1
400003685
X206RI (HG-U133B)
DistantMetastasisFree
7.51
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.51
0
alive
Normal Like
7.51
GSM107331
NA
Normal
IBE
NA
ICR3
400003686
X092NO (HG-U133B)
DistantMetastasisFree
7.67
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.67
0
alive
Normal Like
7.67
GSM107332
NA
LumA
IBD
PID
ICR2
400003687
X087BU (HG-U133B)
DistantMetastasisFree
8.3
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.3
0
alive
No Subtype
8.3
GSM107333
NA
LumA
IBD
FID
ICR3
400003688
X330IG (HG-U133B)
DistantMetastasisFree
7.78
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.78
0
alive
Luminal A
7.78
GSM107334
NA
Normal
IBE
NA
ICR3
400003689
X352AN (HG-U133B)
DistantMetastasisFree
7.89
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.89
0
alive
Basal
7.89
GSM107335
NA
LumA
IBD
PID
ICR1
400003690
X284JE (HG-U133B)
DistantMetastasisFree
7.44
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.44
0
alive
Normal Like
7.44
GSM107336
NA
LumA
IBD
PID
ICR3
400003691
X079JA (HG-U133B)
DistantMetastasisFree
5.95
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.95
0
alive
Luminal A
5.95
GSM107337
NA
LumB
IBD
WID
ICR3
400003692
X052ZA (HG-U133B)
DistantMetastasis
2.78
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
2.78
1
dead
Luminal B
2.83
GSM107338
NA
LumB
IBD
PID
ICR3
400003693
X049SA (HG-U133B)
DistantMetastasisFree
6.26
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.26
0
alive
Luminal A
6.26
GSM107339
NA
LumA
IBD
PID
ICR1
400003694
X019ER (HG-U133B)
DistantMetastasisFree
8.32
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
8.32
0
alive
Luminal A
8.32
GSM107340
NA
Her2
IBD
FID
ICR3
400003695
X349LE (HG-U133B)
DistantMetastasis
3.86
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
3.86
1
dead
ERBB2
4.83
GSM107341
NA
LumA
IBD
WID
ICR2
400003696
X056EN (HG-U133B)
DistantMetastasisFree
6.17
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.89
0
dead
Luminal A
6.17
GSM107342
NA
Her2
IBE
FID
ICR4
400003697
X216AN (HG-U133B)
DistantMetastasisFree
8.13
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.13
0
alive
Luminal B
8.13
GSM107343
NA
LumA
IBD
WID
ICR1
400003698
X260LI (HG-U133B)
DistantMetastasisFree
5.95
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.95
0
alive
Normal Like
5.95
GSM107344
NA
Normal
IBE
NA
ICR2
400003699
X136ER (HG-U133B)
DistantMetastasisFree
5.98
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.98
0
alive
Normal Like
5.98
GSM107345
NA
ClaudinLow
IBD
FID
ICR2
400003700
X176TH (HG-U133B)
DistantMetastasisFree
6.05
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.05
0
alive
Basal
6.05
GSM107346
NA
Basal
IBD
WID
ICR3
400003701
X345VI (HG-U133B)
DistantMetastasisFree
6.76
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
6.76
0
alive
Normal Like
6.76
GSM107347
NA
Normal
IBE
NA
ICR1
400003702
X157HA (HG-U133B)
DistantMetastasisFree
8.32
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.32
0
alive
Normal Like
8.32
GSM107348
NA
Normal
IBE
NA
ICR2
400003703
X081UL (HG-U133B)
DistantMetastasisFree
6.55
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
6.55
0
alive
ERBB2
6.55
GSM107349
NA
LumA
IBD
WID
ICR2
400003704
X123ER (HG-U133B)
DistantMetastasisFree
7.94
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.94
0
alive
Normal Like
7.94
GSM107350
NA
Basal
IBE
PID
ICR2
400003705
X170FA (HG-U133B)
DistantMetastasisFree
6.55
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.55
0
alive
Basal
6.55
GSM107351
NA
LumB
IBE
WID
ICR3
400003706
X331HA (HG-U133B)
DistantMetastasisFree
7.05
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.05
0
alive
Luminal A
7.05
GSM107352
NA
Her2
IBE
WID
ICR3
400003707
X192LA (HG-U133B)
DistantMetastasisFree
6.4
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.4
0
alive
ERBB2
6.4
GSM107353
NA
Her2
IBE
FID
ICR3
400003708
X075DA (HG-U133B)
DistantMetastasisFree
7.4
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.4
0
alive
Luminal B
7.4
GSM107354
NA
Basal
IBE
PID
ICR2
400003709
X029AN (HG-U133B)
DistantMetastasis
1.72
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.12
1
dead
Basal
1.72
GSM107355
NA
Basal
IBE
WID
ICR3
400003710
X336MO (HG-U133B)
DistantMetastasisFree
7.71
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.44
0
alive
Basal
7.71
GSM107356
NA
Her2
IBE
FID
ICR3
400003711
X150JO (HG-U133B)
DistantMetastasisFree
5.69
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
5.69
0
alive
ERBB2
5.69
GSM107357
NA
Basal
IBE
PID
ICR1
400003712
X128SA (HG-U133B)
DistantMetastasisFree
7.67
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.67
0
alive
Basal
7.67
GSM107358
NA
LumB
IBE
PID
ICR2
400003713
X275WE (HG-U133B)
DistantMetastasis
3.92
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
3.92
1
dead
Luminal B
4.79
GSM107359
NA
LumB
IBD
PID
ICR1
400003714
X285FL (HG-U133B)
DistantMetastasisFree
7.78
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.78
0
alive
Luminal A
7.78
GSM107360
NA
LumB
IBD
PID
ICR3
400003715
X171SO (HG-U133B)
DistantMetastasisFree
7.5
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.5
0
alive
Luminal A
7.5
GSM107361
NA
ClaudinLow
IBD
PID
ICR1
400003716
X249LU (HG-U133B)
DistantMetastasisFree
7.36
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.36
0
alive
Luminal A
7.36
GSM107362
NA
LumB
IBE
FID
ICR3
400003717
X244SO (HG-U133B)
DistantMetastasisFree
7.73
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.73
0
alive
Basal
7.73
GSM107363
NA
Basal
IBE
PID
ICR1
400003718
X258VE (HG-U133B)
DistantMetastasis
1.12
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.12
1
dead
Basal
1.14
GSM107364
NA
Her2
IBD
FID
ICR3
400003719
X154AN (HG-U133B)
DistantMetastasis
1.3
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G2
NA
NA
1.3
1
dead
ERBB2
1.67
GSM107365
NA
Her2
IBE
WID
ICR3
400003720
X351OL (HG-U133B)
DistantMetastasis
3.84
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
1.46
1
dead
ERBB2
3.84
GSM107366
NA
Normal
IBE
NA
ICR3
400003721
X146HO (HG-U133B)
DistantMetastasisFree
8.47
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.47
0
alive
No Subtype
8.47
GSM107367
NA
Her2
IBD
PID
ICR1
400003722
X221LU (HG-U133B)
DistantMetastasisFree
8.03
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.03
0
alive
ERBB2
8.03
GSM107368
NA
Normal
IBE
NA
ICR2
400003723
X085RY (HG-U133B)
DistantMetastasisFree
7.99
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.99
0
alive
Normal Like
7.99
GSM107369
NA
LumB
IBE
PID
ICR3
400003724
X365MA (HG-U133B)
DistantMetastasis
0.76
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
0.76
1
dead
Luminal B
2.8
GSM107370
NA
Her2
IBD
PID
ICR1
400003725
X325OS (HG-U133B)
DistantMetastasisFree
7.63
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.63
0
alive
ERBB2
7.63
GSM107371
NA
LumA
IBD
PID
ICR1
400003726
X379BA (HG-U133B)
DistantMetastasisFree
7.84
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.84
0
alive
Luminal A
7.84
GSM107372
NA
NA
IBE
NA
ICR1
400003727
X283AN (HG-U133B)
DistantMetastasisFree
7.75
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
7.75
0
alive
No Subtype
7.75
GSM107373
NA
LumA
IBD
WID
ICR4
400003728
X202NI (HG-U133B)
DistantMetastasisFree
7.67
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
7.67
0
alive
No Subtype
7.67
GSM107374
NA
Basal
IBE
PID
ICR1
400003729
X014ER (HG-U133B)
DistantMetastasisFree
2.28
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.26
0
dead
Basal
2.28
GSM107375
NA
Normal
IBE
NA
ICR3
400003730
X059HO (HG-U133B)
DistantMetastasisFree
6.61
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.61
0
alive
ERBB2
6.61
GSM107376
NA
Basal
IBE
WID
ICR3
400003731
X341UL (HG-U133B)
DistantMetastasisFree
7.19
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
7.19
0
alive
Basal
7.19
GSM107377
NA
ClaudinLow
IBD
PID
ICR3
400003732
X069EK (HG-U133B)
DistantMetastasisFree
6.44
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.44
0
alive
Basal
6.44
GSM107378
NA
Her2
IBD
PID
ICR1
400003733
X095NI (HG-U133B)
DistantMetastasis
4.41
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
0.9
1
dead
ERBB2
4.41
GSM107379
NA
LumB
IBE
PID
ICR2
400003734
X138BR (HG-U133B)
DistantMetastasisFree
6.32
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
6.32
0
alive
Luminal B
6.32
GSM107380
NA
Normal
IBE
NA
ICR2
400003735
X196SA (HG-U133B)
DistantMetastasisFree
8.36
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.36
0
alive
Normal Like
8.36
GSM107381
NA
LumB
IBD
PID
ICR3
400003736
X282WI (HG-U133B)
DistantMetastasisFree
8.49
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
8.49
0
alive
Luminal A
8.49
GSM107382
NA
Normal
IBE
NA
ICR1
400003737
X132VI (HG-U133B)
DistantMetastasisFree
0.18
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.49
0
dead
Normal Like
0.18
GSM107383
NA
LumB
IBE
FID
ICR4
400003738
X048SA (HG-U133B)
DistantMetastasisFree
5.94
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
5.94
0
alive
Luminal B
5.94
GSM107384
NA
Basal
IBE
WID
ICR4
400003739
X288BE (HG-U133B)
DistantMetastasisFree
8.32
DiseaseFree
NA
NA
NA
NA
NA
NA
G3
NA
NA
8.32
0
alive
No Subtype
8.32
GSM107385
NA
LumB
IBE
PID
ICR3
400003740
X036AR (HG-U133B)
DistantMetastasis
1.34
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.34
0
alive
Luminal B
5.98
GSM107386
NA
LumB
IBD
WID
ICR2
400003741
X304VE (HG-U133B)
DistantMetastasisFree
6.02
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
0.67
0
alive
Luminal A
6.02
GSM107387
NA
Her2
IBE
WID
ICR3
400003742
X015HE (HG-U133B)
DistantMetastasis
2.79
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
2.79
1
dead
ERBB2
3.07
GSM107388
NA
Basal
IBE
WID
ICR3
400003743
X327EN (HG-U133B)
DistantMetastasis
4.87
Recurred/Progressed
NA
NA
NA
NA
NA
NA
G3
NA
NA
1.38
1
dead
Basal
4.87
GSM107389
NA
LumA
IBD
WID
ICR2
400003744
X184LO (HG-U133B)
DistantMetastasisFree
5.62
DiseaseFree
NA
NA
NA
NA
NA
NA
G1
NA
NA
5.62
0
alive
Luminal A
5.62
GSM107390
NA
LumB
IBE
PID
ICR1
400003745
X072TE (HG-U133B)
DistantMetastasisFree
0.7
DiseaseFree
NA
NA
NA
NA
NA
NA
G2
NA
NA
5.58
0
dead
No Subtype
0.7

Group Sets View in Gene Expression Browser

Name  
All Samples Default  View
Histology Differentiation Grade   View
Immune Benefit Status   View
Immunological Constant of Rejection   View
Molecular Subtype   View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set  
All Samples
Histology Differentiation Grade
Immune Benefit Status
Immunological Constant of Rejection
Molecular Subtype
Your bug report has been sent!