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In Progress
Clinical

Node Negative, ER-

Purpose

The association between large tumor size and metastatic risk in a majority of clinical cancers has led to questions as to whether these observations are causally related or whether one is simply a marker for the other. The aim of this study was to investigate this question through the analysis of a previously defined “lung metastasis gene-expression signature” (LMS) that mediates experimental breast cancer metastasis selectively to the lung and is expressed by primary human breast cancer with a high risk for developing lung metastasis.

Hypothesis

The hypothesis of this study was that the LMS could provide a mechanistic link between metastasis gene expression, accelerated tumor growth, and likelihood of metastatic recurrence.

Experimental Design

This dataset contains 58 estrogen receptor-negative samples from a cohort of early stage node negative breast cancer patients. Tumour samples were selected from the tumour bank at the Erasmus Medical Center (Rotterdam, Netherlands).

The complete EMC-344 cohort (as referred to by Minn et al) consists of an additional 286 samples as previously described by Wang et al (GEO accession number GSE2034).

Experimental Variables

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Controls

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Methods

Microarray analysis was performed with Affymetrix U133A.

Additional Information

Minn, Andy J., Gaorav P. Gupta, David Padua, Paula Bos, Don X. Nguyen, Dimitry Nuyten, Bas Kreike, et al. “Lung Metastasis Genes Couple Breast Tumor Size and Metastatic Spread.” Proceedings of the National Academy of Sciences of the United States of America 104, no. 16 (April 17, 2007): 6740–45. doi:10.1073/pnas.0701138104.

Wang, Yixin, Jan G. M. Klijn, Yi Zhang, Anieta M. Sieuwerts, Maxime P. Look, Fei Yang, Dmitri Talantov, et al. “Gene-Expression Profiles to Predict Distant Metastasis of Lymph-Node-Negative Primary Breast Cancer.” Lancet (London, England) 365, no. 9460 (February 19, 2005): 671–79. doi:10.1016/S0140-6736(05)17947-1.

Microarray
Affymetrix HG-U133A
58 Samples Loaded: 58
Human (Homo sapiens)
Erasmus Medical Center (EMC), the Netherlands , Breast Cancer Tissue , Nagalla 2013
LN- Breast Cancer
Sample Set Spreadsheet
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Samples Preview
Sample ID series IMS IBS IDS ICR
GSM120649 Erasmus ClaudinLow IBD FID ICR2
GSM120651 Erasmus Basal IBE FID ICR4
GSM120652 Erasmus Her2 IBD PID ICR1
GSM120653 Erasmus Normal IBE NA ICR1
GSM120654 Erasmus LumA IBD PID ICR1
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File
GSE5327_appended.meta.data_v1.csv
Sample Set Spreadsheet
Average Normalized
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Samples Viewer / Editor

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Sample ID Series IMS IBS IDS ICR Array Sample ID Sample Title DMFS 10Y EVENT DMFS 10Y TIME Disease Free Survival Event Distant Met Free Survival Event Distant Met Free Survival Age At Initial Pathologic Diagnosis Lymph Node Status ER Status PR Status Histology Differentiation Grade Tumor Size Cm Pathology T Stage Disease Free Survival Years Sample Title2 Lung Metastasis Gene Expression Signature Status Lung Metastasis Event Lung Met First Event Lung Met Free Survival Years
GSM120649
Erasmus
ClaudinLow
IBD
FID
ICR2
400002598
ER negative human primary breast tumor EA02014_41243_H133A_JA-076
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
11.3388
76
1
LungMetastasisFree
no
11.3388
GSM120651
Erasmus
Basal
IBE
FID
ICR4
400002599
ER negative human primary breast tumor EA02014_41245_H133A_JA-123
DistantMetastasisFree
7.36
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.360655833
123
1
LungMetastasisFree
no
7.360655833
GSM120652
Erasmus
Her2
IBD
PID
ICR1
400002600
ER negative human primary breast tumor EA02014_41246_H133A_JA-401
DistantMetastasis
1.02
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
1.019125833
401
0
LungMetastasisFree
no
1.019125833
GSM120653
Erasmus
Normal
IBE
NA
ICR1
400002601
ER negative human primary breast tumor EA02014_41247_H133A_JA-120
DistantMetastasisFree
8
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.9972675
120
1
LungMetastasisFree
no
7.9972675
GSM120654
Erasmus
LumA
IBD
PID
ICR1
400002602
ER negative human primary breast tumor EA02014_41248_H133A_JA-131
DistantMetastasisFree
8.11
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.10929
131
0
LungMetastasisFree
no
8.10929
GSM120655
Erasmus
Basal
IBE
PID
ICR2
400002603
ER negative human primary breast tumor EA02014_41249_H133A_JA-243
DistantMetastasis
0.84
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
0.84153
243
1
LungMetastasis
yes
0.84153
GSM120656
Erasmus
ClaudinLow
IBD
WID
ICR3
400002604
ER negative human primary breast tumor EA02014_41250_H133A_JA-245
DistantMetastasis
1.87
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
1.874316667
245
1
LungMetastasis
yes
1.874316667
GSM120657
Erasmus
Basal
IBE
WID
ICR3
400002605
ER negative human primary breast tumor EA02014_41251_H133A_JA-632
DistantMetastasisFree
5.09
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.090164167
632
1
LungMetastasisFree
no
5.090164167
GSM120658
Erasmus
Basal
IBE
FID
ICR4
400002606
ER negative human primary breast tumor EA02014_41252_H133A_JA-746
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
10.22130833
746
1
LungMetastasisFree
no
10.22130833
GSM120659
Erasmus
Her2
IBE
WID
ICR4
400002607
ER negative human primary breast tumor EA02014_41253_H133A_JA-755
DistantMetastasisFree
8.76
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.756833333
755
0
LungMetastasisFree
no
8.756833333
GSM120660
Erasmus
ClaudinLow
IBD
WID
ICR3
400002608
ER negative human primary breast tumor EA02014_41254_H133A_JA-812
DistantMetastasisFree
9.7
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
9.704916667
812
1
LungMetastasisFree
no
9.704916667
GSM120661
Erasmus
ClaudinLow
IBD
WID
ICR4
400002609
ER negative human primary breast tumor EA02014_41255_H133A_JA-838
DistantMetastasisFree
7.21
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.213115
838
0
LungMetastasisFree
no
7.213115
GSM120662
Erasmus
LumA
IBD
WID
ICR3
400002610
ER negative human primary breast tumor EA02014_41256_H133A_JA-872
DistantMetastasis
5.73
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.729508333
872
0
LungMetastasisFree
no
5.729508333
GSM120663
Erasmus
ClaudinLow
IBD
FID
ICR4
400002611
ER negative human primary breast tumor EA02014_41257_H133A_JA-248
DistantMetastasis
2.41
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
2.412568333
248
1
LungMetastasis
no
3.662568333
GSM120664
Erasmus
Her2
IBD
WID
ICR3
400002612
ER negative human primary breast tumor EA02014_41258_H133A_JA-282
DistantMetastasisFree
6.93
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.931694167
282
0
LungMetastasisFree
no
6.931694167
GSM120665
Erasmus
LumB
IBD
PID
ICR1
400002613
ER negative human primary breast tumor EA02014_41259_H133A_JA-929
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
13.04098333
929
0
LungMetastasisFree
no
13.04098333
GSM120666
Erasmus
Her2
IBD
FID
ICR4
400002614
ER negative human primary breast tumor EA02014_41260_H133A_JA-941
DistantMetastasisFree
7.29
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.2896175
941
0
LungMetastasisFree
no
7.2896175
GSM120667
Erasmus
LumB
IBD
FID
ICR4
400002615
ER negative human primary breast tumor EA02014_41261_H133A_JA-1060
DistantMetastasisFree
5.94
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.939890833
1060
0
LungMetastasisFree
no
5.939890833
GSM120668
Erasmus
Basal
IBE
WID
ICR3
400002616
ER negative human primary breast tumor EA02014_41262_H133A_JA-1222
DistantMetastasis
0.6
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
0.598360667
1222
0
LungMetastasis
yes
0.598360667
GSM120669
Erasmus
Her2
IBD
WID
ICR2
400002617
ER negative human primary breast tumor EA02014_41263_H133A_JA-1582
DistantMetastasisFree
8.02
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.019125833
1582
0
LungMetastasisFree
no
8.019125833
GSM120670
Erasmus
Her2
IBD
WID
ICR2
400002618
ER negative human primary breast tumor EA02014_41264_H133A_JA-1487
DistantMetastasisFree
5.88
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.879781667
1487
0
LungMetastasisFree
no
5.879781667
GSM120671
Erasmus
Basal
IBE
PID
ICR2
400002619
ER negative human primary breast tumor EA02014_41265_H133A_JA-1069
DistantMetastasis
1.97
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
1.969945
1069
1
LungMetastasis
no
2.219945
GSM120672
Erasmus
ClaudinLow
IBD
PID
ICR1
400002620
ER negative human primary breast tumor EA02014_41266_H133A_JA-1412
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
10.64480833
1412
1
LungMetastasisFree
no
10.64480833
GSM120673
Erasmus
Her2
IBD
PID
ICR2
400002621
ER negative human primary breast tumor EA02014_41267_H133A_JA-1455
DistantMetastasisFree
5.36
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.357923333
1455
0
LungMetastasisFree
no
5.357923333
GSM120674
Erasmus
Her2
IBE
PID
ICR2
400002622
ER negative human primary breast tumor EA02014_41268_H133A_JA-1482
DistantMetastasisFree
7.19
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.193989167
1482
1
LungMetastasisFree
no
7.193989167
GSM120675
Erasmus
Basal
IBE
WID
ICR3
400002623
ER negative human primary breast tumor EA02014_41269_H133A_JA-1497
DistantMetastasisFree
9.95
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
9.95355
1497
1
LungMetastasisFree
no
9.95355
GSM120676
Erasmus
Her2
IBE
FID
ICR4
400002624
ER negative human primary breast tumor EA02014_41270_H133A_JA-1501
DistantMetastasisFree
6.14
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.142076667
1501
0
LungMetastasisFree
no
6.142076667
GSM120677
Erasmus
Basal
IBE
PID
ICR4
400002625
ER negative human primary breast tumor EA02014_41271_H133A_JA-1524
DistantMetastasisFree
5.7
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.696721667
1524
0
LungMetastasisFree
no
5.696721667
GSM120678
Erasmus
Normal
IBE
NA
ICR4
400002626
ER negative human primary breast tumor EA02014_41272_H133A_JA-1416
DistantMetastasisFree
8.87
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.86885
1416
0
LungMetastasisFree
no
8.86885
GSM120679
Erasmus
Basal
IBE
PID
ICR2
400002627
ER negative human primary breast tumor EA02014_41273_H133A_JA-1535
DistantMetastasis
3.47
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
3.469945
1535
1
LungMetastasisFree
no
3.469945
GSM120680
Erasmus
Basal
IBE
PID
ICR3
400002628
ER negative human primary breast tumor EA02014_41274_H133A_JA-1563
DistantMetastasisFree
8.61
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.606558333
1563
1
LungMetastasisFree
no
8.606558333
GSM120681
Erasmus
Her2
IBD
PID
ICR2
400002629
ER negative human primary breast tumor EA02014_41275_H133A_JA-1568
DistantMetastasisFree
9.59
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
9.587433333
1568
0
LungMetastasisFree
no
9.587433333
GSM120682
Erasmus
Basal
IBE
WID
ICR4
400002630
ER negative human primary breast tumor EA02014_41276_H133A_JA-1571
DistantMetastasisFree
6.36
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.360655833
1571
1
LungMetastasisFree
no
6.360655833
GSM120683
Erasmus
Basal
IBE
FID
ICR4
400002631
ER negative human primary breast tumor EA02014_41277_H133A_JA-1593
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
10.57104167
1593
1
LungMetastasisFree
no
10.57104167
GSM120684
Erasmus
Basal
IBE
PID
ICR1
400002632
ER negative human primary breast tumor EA02014_41278_H133A_JA-1622
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
10.92895833
1622
0
LungMetastasisFree
no
10.92895833
GSM120685
Erasmus
Basal
IBE
WID
ICR2
400002633
ER negative human primary breast tumor EA02014_41279_H133A_JA-1650
DistantMetastasisFree
7.33
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.327869167
1650
0
LungMetastasisFree
no
7.327869167
GSM120686
Erasmus
Basal
IBE
PID
ICR1
400002634
ER negative human primary breast tumor EA02014_41280_H133A_JA-1661
DistantMetastasisFree
6.74
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.737705
1661
0
LungMetastasisFree
no
6.737705
GSM120687
Erasmus
Basal
IBE
PID
ICR3
400002635
ER negative human primary breast tumor EA02014_41282_H133A_JA-1555
DistantMetastasis
0.77
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
0.765027333
1555
1
LungMetastasisFree
no
0.765027333
GSM120688
Erasmus
Basal
IBE
WID
ICR3
400002636
ER negative human primary breast tumor EA02014_41283_H133A_JA-1589
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
10.84153333
1589
1
LungMetastasisFree
no
10.84153333
GSM120689
Erasmus
Normal
IBE
NA
ICR3
400002637
ER negative human primary breast tumor EA02014_41284_H133A_JA-854
DistantMetastasisFree
5
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5
854
1
LungMetastasisFree
no
5
GSM120690
Erasmus
Basal
IBE
FID
ICR4
400002638
ER negative human primary breast tumor EA02014_41285_H133A_JA-1821
DistantMetastasisFree
7.32
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.3196725
1821
0
LungMetastasisFree
no
7.3196725
GSM120691
Erasmus
ClaudinLow
IBD
WID
ICR1
400002639
ER negative human primary breast tumor EA02014_41286_H133A_JA-1828
DistantMetastasisFree
8.57
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.565575
1828
0
LungMetastasisFree
no
8.565575
GSM120692
Erasmus
Basal
IBE
WID
ICR2
400002640
ER negative human primary breast tumor EA02014_41287_H133A_JA-1858
DistantMetastasisFree
7.39
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.385245833
1858
1
LungMetastasisFree
no
7.385245833
GSM120693
Erasmus
Her2
IBD
FID
ICR3
400002641
ER negative human primary breast tumor EA02014_41288_H133A_JA-1853
DistantMetastasisFree
5.22
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.218579167
1853
0
LungMetastasisFree
no
5.218579167
GSM120694
Erasmus
Her2
IBE
FID
ICR3
400002642
ER negative human primary breast tumor EA02014_41289_H133A_JA-1871
DistantMetastasisFree
7.18
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.177595833
1871
0
LungMetastasisFree
no
7.177595833
GSM120695
Erasmus
Basal
IBE
WID
ICR4
400002643
ER negative human primary breast tumor EA02014_41290_H133A_JA-1938
DistantMetastasisFree
7.49
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.489070833
1938
1
LungMetastasisFree
no
7.489070833
GSM120696
Erasmus
Basal
IBE
PID
ICR2
400002644
ER negative human primary breast tumor EA02014_41291_H133A_JA-1939
DistantMetastasisFree
10
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
12.62568333
1939
1
LungMetastasisFree
no
12.62568333
GSM120697
Erasmus
Normal
IBE
NA
ICR3
400002645
ER negative human primary breast tumor EA02014_41292_H133A_JA-1949
DistantMetastasisFree
9.29
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
9.286883333
1949
0
LungMetastasisFree
no
9.286883333
GSM120698
Erasmus
Basal
IBE
WID
ICR3
400002646
ER negative human primary breast tumor EA02014_41293_H133A_JA-1966
DistantMetastasisFree
5.12
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.122950833
1966
1
LungMetastasisFree
no
5.122950833
GSM120699
Erasmus
Basal
IBE
PID
ICR3
400002647
ER negative human primary breast tumor EA02014_41294_H133A_JA-1967
DistantMetastasisFree
6.64
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.644808333
1967
0
LungMetastasisFree
no
6.644808333
GSM120700
Erasmus
Her2
IBE
FID
ICR4
400002648
ER negative human primary breast tumor EA02014_41295_H133A_JA-1976
DistantMetastasisFree
6.06
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.060109167
1976
1
LungMetastasisFree
no
6.060109167
GSM120701
Erasmus
Basal
IBE
FID
ICR3
400002649
ER negative human primary breast tumor EA02014_41296_H133A_JA-1978
DistantMetastasisFree
5.75
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
5.748634167
1978
0
LungMetastasisFree
no
5.748634167
GSM120702
Erasmus
ClaudinLow
IBD
PID
ICR2
400002650
ER negative human primary breast tumor EA02014_41297_H133A_JA-2001
DistantMetastasis
0.36
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
0.363388
2001
1
LungMetastasis
yes
0.363388
GSM120703
Erasmus
Basal
IBE
FID
ICR3
400002651
ER negative human primary breast tumor EA02014_41298_H133A_JA-2007
DistantMetastasisFree
7.6
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.6010925
2007
1
LungMetastasisFree
no
7.6010925
GSM120704
Erasmus
LumA
IBD
WID
ICR1
400002652
ER negative human primary breast tumor EA02014_41299_H133A_JA-2021
DistantMetastasisFree
7.6
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
7.595628333
2021
0
LungMetastasisFree
no
7.595628333
GSM120705
Erasmus
Basal
IBE
PID
ICR2
400002653
ER negative human primary breast tumor EA02014_41300_H133A_JA-2025
DistantMetastasisFree
6.91
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
6.909835833
2025
1
LungMetastasisFree
no
6.909835833
GSM120706
Erasmus
ClaudinLow
IBD
FID
ICR3
400002654
ER negative human primary breast tumor EA02014_41301_H133A_JA-2038
DistantMetastasisFree
8.51
DiseaseFree
NA
NA
NA
NA
NA
NA
NA
NA
NA
8.513658333
2038
1
LungMetastasisFree
no
8.513658333
GSM120707
Erasmus
Her2
IBD
PID
ICR2
400002655
ER negative human primary breast tumor EA02014_41302_H133A_JA-2024
DistantMetastasis
1.8
Recurred/Progressed
NA
NA
NA
NA
NA
NA
NA
NA
NA
1.800546667
2024
0
LungMetastasis
yes
1.800546667

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