SIDRA
Sample Set Annotation Tool
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Molecular Subtype
New Group
Split Group Set
Reset Group Set
View in Gene Expression Browser
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Groups
Normal
400004047: GSM110874
400004052: GSM110879
400004053: GSM110880
400004074: GSM110901
400004088: GSM110915
400004089: GSM110916
400004090: GSM110917
400004107: GSM110934
400004109: GSM110936
400004110: GSM110937
400004113: GSM110940
400004114: GSM110941
400004115: GSM110942
400004118: GSM110945
400004119: GSM110946
400004126: GSM110953
400004130: GSM110957
400004138: GSM110965
400004156: GSM110983
400004166: GSM110993
400004176: GSM111003
400004183: GSM111010
400004185: GSM111012
400004192: GSM111019
400004193: GSM111020
400004206: GSM111033
400004209: GSM111036
400004212: GSM111039
400004226: GSM111053
400004230: GSM111057
400004237: GSM111064
400004238: GSM111065
400004240: GSM111067
400004241: GSM111068
400004248: GSM111075
400004252: GSM111079
400004254: GSM111081
400004260: GSM111087
400004263: GSM111090
400004268: GSM111095
400004283: GSM111110
400004292: GSM111119
400004298: GSM119980
400004301: GSM119983
400004303: GSM119985
400004304: GSM119986
400004309: GSM119991
0
samples selected
Move selected samples to group
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
Her2
400004049: GSM110876
400004056: GSM110883
400004058: GSM110885
400004061: GSM110888
400004064: GSM110891
400004071: GSM110898
400004076: GSM110903
400004077: GSM110904
400004081: GSM110908
400004083: GSM110910
400004097: GSM110924
400004104: GSM110931
400004105: GSM110932
400004108: GSM110935
400004112: GSM110939
400004122: GSM110949
400004123: GSM110950
400004125: GSM110952
400004128: GSM110955
400004149: GSM110976
400004163: GSM110990
400004165: GSM110992
400004170: GSM110997
400004171: GSM110998
400004190: GSM111017
400004204: GSM111031
400004205: GSM111032
400004210: GSM111037
400004224: GSM111051
400004227: GSM111054
400004234: GSM111061
400004245: GSM111072
400004251: GSM111078
400004259: GSM111086
400004261: GSM111088
400004262: GSM111089
400004269: GSM111096
400004270: GSM111097
400004275: GSM111102
400004280: GSM111107
400004281: GSM111108
400004285: GSM111112
400004289: GSM111116
400004291: GSM111118
400004310: GSM119992
400004314: GSM119996
400004315: GSM119997
400004317: GSM119999
400004318: GSM120000
400004330: GSM120012
0
samples selected
Move selected samples to group
Normal
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
Basal
400004050: GSM110877
400004055: GSM110882
400004079: GSM110906
400004080: GSM110907
400004086: GSM110913
400004116: GSM110943
400004148: GSM110975
400004154: GSM110981
400004157: GSM110984
400004159: GSM110986
400004167: GSM110994
400004178: GSM111005
400004182: GSM111009
400004184: GSM111011
400004186: GSM111013
400004202: GSM111029
400004203: GSM111030
400004217: GSM111044
400004222: GSM111049
400004228: GSM111055
400004229: GSM111056
400004232: GSM111059
400004235: GSM111062
400004236: GSM111063
400004242: GSM111069
400004258: GSM111085
400004265: GSM111092
400004266: GSM111093
400004267: GSM111094
400004271: GSM111098
400004273: GSM111100
400004286: GSM111113
400004294: GSM111121
400004313: GSM119995
400004320: GSM120002
400004321: GSM120003
400004322: GSM120004
0
samples selected
Move selected samples to group
Normal
Her2
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
LumA
400004060: GSM110887
400004062: GSM110889
400004063: GSM110890
400004065: GSM110892
400004066: GSM110893
400004069: GSM110896
400004072: GSM110899
400004075: GSM110902
400004082: GSM110909
400004084: GSM110911
400004092: GSM110919
400004093: GSM110920
400004094: GSM110921
400004096: GSM110923
400004100: GSM110927
400004102: GSM110929
400004103: GSM110930
400004106: GSM110933
400004111: GSM110938
400004132: GSM110959
400004135: GSM110962
400004136: GSM110963
400004139: GSM110966
400004142: GSM110969
400004144: GSM110971
400004145: GSM110972
400004147: GSM110974
400004150: GSM110977
400004152: GSM110979
400004160: GSM110987
400004161: GSM110988
400004162: GSM110989
400004169: GSM110996
400004179: GSM111006
400004187: GSM111014
400004188: GSM111015
400004189: GSM111016
400004191: GSM111018
400004195: GSM111022
400004196: GSM111023
400004197: GSM111024
400004207: GSM111034
400004208: GSM111035
400004213: GSM111040
400004216: GSM111043
400004218: GSM111045
400004219: GSM111046
400004221: GSM111048
400004225: GSM111052
400004231: GSM111058
400004239: GSM111066
400004243: GSM111070
400004244: GSM111071
400004253: GSM111080
400004256: GSM111083
400004274: GSM111101
400004276: GSM111103
400004279: GSM111106
400004290: GSM111117
400004293: GSM111120
400004296: GSM119978
400004299: GSM119981
400004300: GSM119982
400004307: GSM119989
400004329: GSM120011
400004334: GSM120016
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
LumB
400004051: GSM110878
400004054: GSM110881
400004057: GSM110884
400004059: GSM110886
400004067: GSM110894
400004068: GSM110895
400004073: GSM110900
400004085: GSM110912
400004087: GSM110914
400004091: GSM110918
400004095: GSM110922
400004098: GSM110925
400004099: GSM110926
400004117: GSM110944
400004120: GSM110947
400004124: GSM110951
400004129: GSM110956
400004141: GSM110968
400004143: GSM110970
400004146: GSM110973
400004151: GSM110978
400004155: GSM110982
400004158: GSM110985
400004168: GSM110995
400004172: GSM110999
400004173: GSM111000
400004174: GSM111001
400004175: GSM111002
400004177: GSM111004
400004198: GSM111025
400004200: GSM111027
400004246: GSM111073
400004249: GSM111076
400004250: GSM111077
400004255: GSM111082
400004257: GSM111084
400004264: GSM111091
400004272: GSM111099
400004277: GSM111104
400004278: GSM111105
400004282: GSM111109
400004284: GSM111111
400004288: GSM111115
400004295: GSM111122
400004297: GSM119979
400004302: GSM119984
400004308: GSM119990
400004316: GSM119998
400004324: GSM120006
400004325: GSM120007
400004326: GSM120008
400004327: GSM120009
400004328: GSM120010
400004331: GSM120013
400004333: GSM120015
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
ClaudinLow
NA
All Samples
Move
Create sample set from this group
ClaudinLow
400004127: GSM110954
400004137: GSM110964
400004194: GSM111021
400004306: GSM119988
400004323: GSM120005
400004335: GSM120017
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
NA
All Samples
Move
Create sample set from this group
NA
400004048: GSM110875
400004070: GSM110897
400004078: GSM110905
400004101: GSM110928
400004121: GSM110948
400004131: GSM110958
400004133: GSM110960
400004134: GSM110961
400004140: GSM110967
400004153: GSM110980
400004164: GSM110991
400004180: GSM111007
400004181: GSM111008
400004199: GSM111026
400004201: GSM111028
400004211: GSM111038
400004214: GSM111041
400004215: GSM111042
400004220: GSM111047
400004223: GSM111050
400004233: GSM111060
400004247: GSM111074
400004287: GSM111114
400004305: GSM119987
400004311: GSM119993
400004312: GSM119994
400004319: GSM120001
400004332: GSM120014
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
All Samples
Move
Create sample set from this group
All Samples
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
Move
Create sample set from this group
Are you sure?
Are you sure you want to delete this group?
New Group
Name
Split Group Set
Split Using
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Event
Disease Free Survival Years
Distant Met Free Survival
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Endocrine Therapy Only 1=included In Survival Analysis
ER Status
Genetic Grade Signature Status Sws Classifier
Histology Differentiation Grade
Histology Differention Grade
IBS
ICR
IDS
IMS
Lymph Node Status
No Systemic Therapy 1=included In Survival Analysis
P53 Mutation Status
Pathology T Stage
PR Status
Probability1 By Sws Classifier
Probability3 By Sws Classifier
Sample Title
Sample Title2
Series
Tumor Size Cm
Reset Group Set
This will remove all current groups and create one group with all samples! Are you sure you want to reset?
Create Subset
Select which information you'd like to copy from the current sample set to your new subset.
Options
Copy all annotations
Copy all files
Group Settings
Group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Name
Display Order
Move
Move this group to
before
after
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Color
Create Groups
Split by
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Event
Disease Free Survival Years
Distant Met Free Survival
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Endocrine Therapy Only 1=included In Survival Analysis
ER Status
Genetic Grade Signature Status Sws Classifier
Histology Differentiation Grade
Histology Differention Grade
IBS
ICR
IDS
IMS
Lymph Node Status
No Systemic Therapy 1=included In Survival Analysis
P53 Mutation Status
Pathology T Stage
PR Status
Probability1 By Sws Classifier
Probability3 By Sws Classifier
Sample Title
Sample Title2
Series
Tumor Size Cm
(split into
60
groups)
Ex:
68, 40, 51, 52, 80
Name by
Appending column name to group name
Using column name
Create Groups
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1.70.7-stable-gxb1-release