SIDRA
Sample Set Annotation Tool
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Molecular Subtype
New Group
Split Group Set
Reset Group Set
View in Gene Expression Browser
Return to Annotation Tool
Groups
Normal
400005600: GSM232207
400005602: GSM232209
400005606: GSM232213
400005609: GSM232216
400005611: GSM232218
400005619: GSM232226
400005625: GSM232232
400005626: GSM232233
400005627: GSM232234
400005630: GSM232237
400005635: GSM232242
400005636: GSM232243
400005640: GSM232247
400005642: GSM232249
400005644: GSM232251
0
samples selected
Move selected samples to group
Her2
Basal
LumA
LumB
NA
All Samples
Move
Create sample set from this group
Her2
400005587: GSM232194
400005593: GSM232200
400005597: GSM232204
400005608: GSM232215
400005610: GSM232217
400005615: GSM232222
400005616: GSM232223
400005620: GSM232227
400005621: GSM232228
400005629: GSM232236
400005639: GSM232246
400005645: GSM232252
400005652: GSM232259
400005656: GSM232263
400005660: GSM232267
0
samples selected
Move selected samples to group
Normal
Basal
LumA
LumB
NA
All Samples
Move
Create sample set from this group
Basal
400005592: GSM232199
400005603: GSM232210
400005605: GSM232212
400005617: GSM232224
400005633: GSM232240
400005641: GSM232248
400005653: GSM232260
400005658: GSM232265
400005661: GSM232268
400005662: GSM232269
0
samples selected
Move selected samples to group
Normal
Her2
LumA
LumB
NA
All Samples
Move
Create sample set from this group
LumA
400005588: GSM232195
400005590: GSM232197
400005595: GSM232202
400005598: GSM232205
400005599: GSM232206
400005601: GSM232208
400005604: GSM232211
400005612: GSM232219
400005623: GSM232230
400005628: GSM232235
400005631: GSM232238
400005632: GSM232239
400005634: GSM232241
400005643: GSM232250
400005648: GSM232255
400005649: GSM232256
400005650: GSM232257
400005654: GSM232261
400005663: GSM232270
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumB
NA
All Samples
Move
Create sample set from this group
LumB
400005591: GSM232198
400005594: GSM232201
400005596: GSM232203
400005607: GSM232214
400005613: GSM232220
400005614: GSM232221
400005618: GSM232225
400005622: GSM232229
400005624: GSM232231
400005637: GSM232244
400005646: GSM232253
400005647: GSM232254
400005651: GSM232258
400005655: GSM232262
400005657: GSM232264
400005659: GSM232266
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
NA
All Samples
Move
Create sample set from this group
NA
400005589: GSM232196
400005638: GSM232245
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
All Samples
Move
Create sample set from this group
All Samples
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
NA
Move
Create sample set from this group
Are you sure?
Are you sure you want to delete this group?
New Group
Name
Split Group Set
Split Using
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Days
Disease Free Survival Event
Distant Met Free Survival Days
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Status
Histology Differentiation Grade
IBS
ICR
IDS
IMS
Lymph Node Status
Pathology T Stage
PR Status
Sample Title
Series
Tumor Size Cm
Type Treatment
Reset Group Set
This will remove all current groups and create one group with all samples! Are you sure you want to reset?
Create Subset
Select which information you'd like to copy from the current sample set to your new subset.
Options
Copy all annotations
Copy all files
Group Settings
Group
Normal
Her2
Basal
LumA
LumB
NA
All Samples
Name
Display Order
Move
Move this group to
before
after
Normal
Her2
Basal
LumA
LumB
NA
All Samples
Move
Color
Create Groups
Split by
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Days
Disease Free Survival Event
Distant Met Free Survival Days
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Status
Histology Differentiation Grade
IBS
ICR
IDS
IMS
Lymph Node Status
Pathology T Stage
PR Status
Sample Title
Series
Tumor Size Cm
Type Treatment
(split into
30
groups)
Ex:
64, 73, 66, 75, 63
Name by
Appending column name to group name
Using column name
Create Groups
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1.70.7-stable-gxb1-release