SIDRA
Sample Set Annotation Tool
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Molecular Subtype
New Group
Split Group Set
Reset Group Set
View in Gene Expression Browser
Return to Annotation Tool
Groups
Normal
400003190: GSM177495
400003201: GSM177506
400003202: GSM177507
400003204: GSM177509
400003205: GSM177510
400003207: GSM177512
400003211: GSM177516
400003217: GSM177522
400003218: GSM177523
400003225: GSM177530
400003233: GSM177538
400003240: GSM177545
400003241: GSM177546
0
samples selected
Move selected samples to group
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
Her2
400003208: GSM177513
400003209: GSM177514
400003220: GSM177525
400003227: GSM177532
400003230: GSM177535
400003232: GSM177537
400003235: GSM177540
0
samples selected
Move selected samples to group
Normal
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
Basal
400003189: GSM177494
400003213: GSM177518
400003236: GSM177541
400003238: GSM177543
400003239: GSM177544
0
samples selected
Move selected samples to group
Normal
Her2
LumA
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
LumA
400003191: GSM177496
400003192: GSM177497
400003193: GSM177498
400003194: GSM177499
400003195: GSM177500
400003196: GSM177501
400003197: GSM177502
400003198: GSM177503
400003199: GSM177504
400003200: GSM177505
400003210: GSM177515
400003212: GSM177517
400003214: GSM177519
400003216: GSM177521
400003221: GSM177526
400003222: GSM177527
400003223: GSM177528
400003224: GSM177529
400003226: GSM177531
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumB
ClaudinLow
NA
All Samples
Move
Create sample set from this group
LumB
400003188: GSM177493
400003203: GSM177508
400003215: GSM177520
400003219: GSM177524
400003228: GSM177533
400003229: GSM177534
400003231: GSM177536
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
ClaudinLow
NA
All Samples
Move
Create sample set from this group
ClaudinLow
400003237: GSM177542
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
NA
All Samples
Move
Create sample set from this group
NA
400003206: GSM177511
400003234: GSM177539
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
All Samples
Move
Create sample set from this group
All Samples
0
samples selected
Move selected samples to group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
Move
Create sample set from this group
Are you sure?
Are you sure you want to delete this group?
New Group
Name
Split Group Set
Split Using
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Event
Disease Free Survival Years
Distant Met Free Survival
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Status
Histology Differentiation Grade
IBS
ICR
IDS
IMS
Lymph Node Status
Pathology T Stage
PR Status
Sample Title
Series
Tumor Size Cm
Reset Group Set
This will remove all current groups and create one group with all samples! Are you sure you want to reset?
Create Subset
Select which information you'd like to copy from the current sample set to your new subset.
Options
Copy all annotations
Copy all files
Group Settings
Group
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Name
Display Order
Move
Move this group to
before
after
Normal
Her2
Basal
LumA
LumB
ClaudinLow
NA
All Samples
Move
Color
Create Groups
Split by
Age At Initial Pathologic Diagnosis
Array Sample ID
Disease Free Survival Event
Disease Free Survival Years
Distant Met Free Survival
Distant Met Free Survival Event
DMFS 10Y EVENT
DMFS 10Y TIME
ER Status
Histology Differentiation Grade
IBS
ICR
IDS
IMS
Lymph Node Status
Pathology T Stage
PR Status
Sample Title
Series
Tumor Size Cm
(split into
22
groups)
Ex:
71, 74, 40, 42, 82
Name by
Appending column name to group name
Using column name
Create Groups
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1.70.7-stable-gxb1-release